Discriminating nursery grounds of juvenile plaice (Pleuronectes platessa) in the south-eastern Irish Sea using otolith microchemistry

Nursery grounds are valuable habitats providing sources of food and refuge during early life stages for many commercially caught marine fish. Distinguishing between different nursery grounds and identifying habitat origin using trace elemental concentrations in aragonite structures of teleost fish has proved valuable in fish ecology and fisheries. This study aimed to (1) compare chemical signatures (elemental fingerprints) within sagittal otoliths of juvenile European plaice Pleuronectes platessa sampled from known nursery habitats in the south-eastern Irish Sea and (2) assess their potential and robustness as natural tags for identifying nursery grounds for the putative south-eastern Irish Sea plaice stock. Otoliths from juvenile plaice (‘1-group’, 6 to 15 cm total length) were obtained from 8 nursery grounds in coastal areas off north-west England and north Wales (including Anglesey) between June and August 2008. Solution-based inductively coupled plasma-mass spectrometry determined the concentrations of 10 elements (Li, Na, Mg, K, Mn, Zn, Rb, Sr, Sn, Ba), with significant differences in otolith element composition observed between all nursery grounds. Cross-validation linear discriminant function analysis (CV-LDFA) classified fish to their nursery ground of capture (46.2 to 93.3%), with a total group CV-LDFA accuracy of 71.0%. CV-LDFA between regions (north-west England and north Wales) classified fish with 82% accuracy. The discrimination of juvenile plaice from all 8 nursery grounds within the south-eastern Irish Sea using otolith microchemistry offers significant opportunities in the development of future effective fisheries management strategies through understanding the supply of juveniles from specific nursery grounds and adult plaice in the south-eastern Irish Sea

Complete genome sequence of community-associated methicillin-resistant Staphylococcus aureus Sequence type 1, SCC mec IV[2B], isolated in the 1990s from northern Western Australia

Sequence type 1 (ST1) methicillin-resistant Staphylococcus aureus (MRSA) SCCmec IV[2B] has become one of the most common community-associated MRSA clones in Australia. We report the complete genome sequence of one of the earliest isolated Australian S. aureus ST1-MRSA-IV strains, WBG8287, isolated from an Indigenous Australian patient living in the remote Kimberley region of Western Australia

Complete genome sequences of three of the earliest community-associated methicillin-resistant Staphylococcus aureus strains isolated in remote Western Australia

Initially reported in Western Australia in the 1980s, community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA) has become a major cause of S. aureus infections globally. We report the complete genome sequences of three of the earliest CA-MRSA strains isolated from remote Australian Indigenous communities in the Kimberley region of Western Australia

Whole-genome sequencing of chronic lymphocytic leukemia identifies subgroups with distinct biological and clinical features

The value of genome-wide over targeted driver analyses for predicting clinical outcomes of cancer patients is debated. Here, we report the whole-genome sequencing of 485 chronic lymphocytic leukemia patients enrolled in clinical trials as part of the United Kingdom’s 100,000 Genomes Project. We identify an extended catalog of recurrent coding and noncoding genetic mutations that represents a source for future studies and provide the most complete high-resolution map of structural variants, copy number changes and global genome features including telomere length, mutational signatures and genomic complexity. We demonstrate the relationship of these features with clinical outcome and show that integration of 186 distinct recurrent genomic alterations defines five genomic subgroups that associate with response to therapy, refining conventional outcome prediction. While requiring independent validation, our findings highlight the potential of whole-genome sequencing to inform future risk stratification in chronic lymphocytic leukemia

The interaction of a 2D turbulent wake with a bluff body

SIGLEAvailable from British Library Document Supply Centre- DSC:D60197 / BLDSC - British Library Document Supply CentreGBUnited Kingdo

Hemispheric asymmetries in font-specific and abstractive priming of written personal names: Evidence from event-related brain potentials

We assessed hemispheric differences in font-specific and abstractive repetition priming for famous persons' names. Participants performed speeded familiarity judgments for foveally presented famous and unfamiliar names. Famous target names were preceded by primes (150 ms) in the left or right visual field (LVF or RVF). Primes were either the same name as the target written in the same font (font-specific priming), the same name in a different font (abstractive priming), or a different name (unprimed condition). In reaction times, LH superiority was strong for abstractive priming across fonts, but was reduced to insignificance for font-specific priming. We observed 3 different ERP modulations of priming for target names: a small font-specific posterior N200 (160–220 ms), a left temporal N250r (220–300 ms), and an N400 modulation (300–500 ms). The left temporal N250r exhibited large and abstractive priming for RVF primes, but smaller and font-specific priming for LVF primes. N400 effects were observed in all priming conditions. With respect to previous findings that N200, N250r, and N400 reflect facilitation at the levels of font-specific encoding, lexical entries for names, and semantic processing, respectively, these findings suggest that the LH superiority for name processing is particularly pronounced for the access to abstractive lexical entries for written names, a process that may be mediated by the left fusiform cortex

Biogeochemical tags in fish: predicting spatial variations in strontium and manganese in Salmo trutta scales using stream water geochemistry

Fish scales of Salmo trutta exhibited regional patterning in Sr and Mn concentrations in major third-order tributaries in a small upland catchment (the Dee catchment in Wales, United Kingdom; drainage area �1800 km2) that appeared to reflect regional variability in catchment geology and stream water chemistry. When baseline signatures in scale element concentrations were established at a number of sites (n = 12) among the upper, middle, and lower regions of the Dee catchment, 73% of fish were classified to their region of capture based on Sr and Mn in scales. However, the regional patterning in scale chemistry was degraded when high-resolution catchment-wide variability in scale element concentrations was predicted using element concentrations in stream water as a proxy for Sr and Mn in scales at 792 sites in first-, second-, and third-order tributaries in the catchment (mean distance between neighbouring sites = 738 m, range = 41�3634 m). This analysis indicated that many locations throughout the catchment could be potential source locations and demonstrates that the initial classification accuracy was artificially inflated. We have illustrated limitations of the site-based study design commonly employed in biogeochemical tagging studies. Future studies should take account of potential variation in baseline signatures at fine geographical scales when determining the accuracy of stock discrimination using biogeochemical tags